STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D899_AMBTCNas2_N domain-containing protein. (231 aa)    
Predicted Functional Partners:
W1P9I7_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.961
W1P2U6_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.958
W1P4D4_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 0.958
W1PD13_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.958
W1PI34_AMBTC
ATPase_AAA_core domain-containing protein.
    
 0.958
W1PJU2_AMBTC
ATPase_AAA_core domain-containing protein.
    
 0.958
W1NWI9_AMBTC
PCI domain-containing protein.
    
 0.953
W1NW02_AMBTC
26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.943
W1PYT7_AMBTC
Uncharacterized protein.
    
 0.943
W1PM67_AMBTC
VWFA domain-containing protein.
   
 0.931
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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