STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D960_AMBTCUncharacterized protein; Belongs to the SIS family. GutQ/KpsF subfamily. (338 aa)    
Predicted Functional Partners:
W1NE75_AMBTC
Uncharacterized protein.
  
 0.877
W1P1N5_AMBTC
Uncharacterized protein.
  
 0.877
U5D584_AMBTC
Thioredoxin domain-containing protein.
  
 
 0.823
W1P541_AMBTC
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.773
W1P419_AMBTC
MoCF_biosynth domain-containing protein.
  
 
 0.770
W1PT94_AMBTC
Glycos_transf_N domain-containing protein.
  
   
 0.670
U5CWL3_AMBTC
Uncharacterized protein.
    
 0.666
W1PP06_AMBTC
Anamorsin homolog; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the cytosolic Fe-S scaffold complex. Electrons are transferred from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Together with the diflavin oxidoreductase, also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase (RN [...]
    
 0.666
W1P0V3_AMBTC
Hcy-binding domain-containing protein.
  
 0.657
W1PJY9_AMBTC
Hcy-binding domain-containing protein.
  
 0.657
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.