U5DA29_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U5DA29_AMBTC

Uncharacterized protein. (340 aa)

Predicted Functional Partners:

U5CTU4_AMBTC

0.904

U5D3Y5_AMBTC

0.637

W1PP11_AMBTC

0.581

W1PFF8_AMBTC

0.559

W1PGN6_AMBTC

0.559

W1PGN8_AMBTC

0.559

W1PSF5_AMBTC

0.559

U5CPT4_AMBTC

0.532

W1PHH6_AMBTC

0.521

W1P4Q7_AMBTC

0.424

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5CPT4_AMBTC	U5DA29_AMBTC	U5CPT4	U5DA29	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.532
U5CTU4_AMBTC	U5DA29_AMBTC	U5CTU4	U5DA29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.904
U5CTU4_AMBTC	W1PP11_AMBTC	U5CTU4	W1PP11	Protein kinase domain-containing protein.	Uncharacterized protein.	0.645
U5D3Y5_AMBTC	U5DA29_AMBTC	U5D3Y5	U5DA29	BZIP domain-containing protein.	Uncharacterized protein.	0.637
U5DA29_AMBTC	U5CPT4_AMBTC	U5DA29	U5CPT4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
U5DA29_AMBTC	U5CTU4_AMBTC	U5DA29	U5CTU4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.904
U5DA29_AMBTC	U5D3Y5_AMBTC	U5DA29	U5D3Y5	Uncharacterized protein.	BZIP domain-containing protein.	0.637
U5DA29_AMBTC	W1P4Q7_AMBTC	U5DA29	W1P4Q7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.424
U5DA29_AMBTC	W1PFF8_AMBTC	U5DA29	W1PFF8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.559
U5DA29_AMBTC	W1PGN6_AMBTC	U5DA29	W1PGN6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.559
U5DA29_AMBTC	W1PGN8_AMBTC	U5DA29	W1PGN8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.559
U5DA29_AMBTC	W1PHH6_AMBTC	U5DA29	W1PHH6	Uncharacterized protein.	Uncharacterized protein.	0.521
U5DA29_AMBTC	W1PP11_AMBTC	U5DA29	W1PP11	Uncharacterized protein.	Uncharacterized protein.	0.581
U5DA29_AMBTC	W1PSF5_AMBTC	U5DA29	W1PSF5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.559
W1P4Q7_AMBTC	U5DA29_AMBTC	W1P4Q7	U5DA29	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.424
W1PFF8_AMBTC	U5DA29_AMBTC	W1PFF8	U5DA29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.559
W1PGN6_AMBTC	U5DA29_AMBTC	W1PGN6	U5DA29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.559
W1PGN8_AMBTC	U5DA29_AMBTC	W1PGN8	U5DA29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.559
W1PHH6_AMBTC	U5DA29_AMBTC	W1PHH6	U5DA29	Uncharacterized protein.	Uncharacterized protein.	0.521
W1PP11_AMBTC	U5CTU4_AMBTC	W1PP11	U5CTU4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.645