STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DBQ4_AMBTCAldo_ket_red domain-containing protein. (115 aa)    
Predicted Functional Partners:
U5D1Z7_AMBTC
Aldo_ket_red domain-containing protein.
 
     0.550
W1PCY8_AMBTC
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.541
U5DCS1_AMBTC
Aldo_ket_red domain-containing protein.
  
     0.522
U5D103_AMBTC
Uncharacterized protein.
    
 0.514
W1NPF9_AMBTC
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.514
U5D1C4_AMBTC
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.454
W1NWK9_AMBTC
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.454
W1P571_AMBTC
Aminotran_5 domain-containing protein.
   
 
  0.429
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.