STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DC78_AMBTCUncharacterized protein. (124 aa)    
Predicted Functional Partners:
W1PNT3_AMBTC
FtsJ domain-containing protein.
   
  
 0.554
U5CVJ2_AMBTC
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.546
W1NFG2_AMBTC
Hflx-type G domain-containing protein.
  
  
 0.537
W1NZV8_AMBTC
Hflx-type G domain-containing protein.
  
  
 0.537
U5D029_AMBTC
Uncharacterized protein.
  
  
 0.518
W1P5G7_AMBTC
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
  
  
 0.518
W1NRM6_AMBTC
Thymidine kinase.
  
    0.495
U5CZ03_AMBTC
Uncharacterized protein.
  
  
 0.493
W1PB19_AMBTC
Uncharacterized protein.
  
  
 0.493
U5CZT9_AMBTC
YqgFc domain-containing protein.
  
    0.486
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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