STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DCD7_AMBTCUncharacterized protein. (136 aa)    
Predicted Functional Partners:
W1PIJ8_AMBTC
Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
   
 
 0.766
U5DBK3_AMBTC
Aminotran_5 domain-containing protein.
  
     0.538
U5DHF4_AMBTC
Uncharacterized protein.
  
     0.536
U5DEN3_AMBTC
Uncharacterized protein.
  
     0.525
U5D2Q4_AMBTC
Uncharacterized protein.
  
     0.524
U5D2R0_AMBTC
Uncharacterized protein.
  
     0.519
U5D7V2_AMBTC
Uncharacterized protein.
   
    0.509
W1PEE7_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
    0.485
W1P5K7_AMBTC
Uncharacterized protein.
   
    0.482
U5CW82_AMBTC
Uncharacterized protein.
    
  0.471
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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