STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DFH0_AMBTCUncharacterized protein. (432 aa)    
Predicted Functional Partners:
W1PCR8_AMBTC
Uncharacterized protein.
      
 0.586
U5DGI5_AMBTC
LEA_2 domain-containing protein.
      
 0.531
W1NWJ6_AMBTC
TPR_REGION domain-containing protein.
      
 0.528
U5D7V8_AMBTC
WD_REPEATS_REGION domain-containing protein.
    
 
 0.513
W1P4Q1_AMBTC
Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.
      
 0.465
W1NGX2_AMBTC
Cleavage and polyadenylation specificity factor subunit 2.
      
 0.461
W1NLG0_AMBTC
RRM domain-containing protein.
      
 0.451
U5D4V1_AMBTC
Uncharacterized protein.
      
 0.450
U5D099_AMBTC
Uncharacterized protein.
      
 0.437
W1PCB2_AMBTC
Uncharacterized protein.
      
 0.402
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.