STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DFT0_AMBTCUncharacterized protein. (293 aa)    
Predicted Functional Partners:
U5D1U4_AMBTC
DUF2012 domain-containing protein.
    
 
 0.946
W1NS17_AMBTC
EMC1_C domain-containing protein.
   
 
 0.943
W1P0U3_AMBTC
TPR_REGION domain-containing protein.
    
 
 0.942
W1PHA9_AMBTC
Uncharacterized protein.
   
 
 0.935
U5D7T8_AMBTC
ER membrane protein complex subunit 3.
    
 
 0.930
W1NNL0_AMBTC
Uncharacterized protein.
    
 
 0.923
W1PTW4_AMBTC
Uncharacterized protein.
    
 
 0.920
W1NI66_AMBTC
MPN domain-containing protein.
    
 
 0.873
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.