STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DFY4_AMBTCRHOMBOID-like protein. (292 aa)    
Predicted Functional Partners:
W1P0I9_AMBTC
Uncharacterized protein.
   
 
 0.690
W1NK26_AMBTC
Uncharacterized protein.
      
 0.534
U5DBK8_AMBTC
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
      
 0.522
W1PSE7_AMBTC
Uncharacterized protein.
   
 
 0.490
U5CWX5_AMBTC
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
      
 0.463
W1NXG6_AMBTC
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
      
 0.463
W1NZ18_AMBTC
Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.
      
 0.461
W1P266_AMBTC
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
      
 0.441
W1P115_AMBTC
Uncharacterized protein.
  
    0.415
W1PFG5_AMBTC
Uncharacterized protein.
  
    0.415
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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