STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DGC8_AMBTCVATC domain-containing protein. (187 aa)    
Predicted Functional Partners:
U5DDI4_AMBTC
C2H2-type domain-containing protein.
 
     0.920
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
   0.710
W1NRE0_AMBTC
Uncharacterized protein.
   
 
 0.644
W1NTP6_AMBTC
ANK_REP_REGION domain-containing protein.
   
 
 0.644
W1NW81_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.644
W1P6P0_AMBTC
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 
 0.644
W1PIU2_AMBTC
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 
 0.644
W1PSR9_AMBTC
U-box domain-containing protein.
    
 
 0.556
W1P0C7_AMBTC
CCHC-type domain-containing protein.
   
 
 0.530
U5CUB2_AMBTC
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
    
   0.523
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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