STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DGX8_AMBTCHIT domain-containing protein. (186 aa)    
Predicted Functional Partners:
W1PNE8_AMBTC
Uncharacterized protein.
    
 0.600
U5D2U5_AMBTC
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.586
U5D4P8_AMBTC
Uncharacterized protein.
   
 
  0.559
U5D4U5_AMBTC
Uncharacterized protein.
    
 0.546
W1P1C4_AMBTC
WAT1-related protein.
    
 0.546
W1NYL2_AMBTC
HIT domain-containing protein.
  
   
 0.536
U5DAP4_AMBTC
PPR_long domain-containing protein.
    
 0.507
U5DG00_AMBTC
Uncharacterized protein.
  
 
  0.505
U5CWA5_AMBTC
MAT1 domain-containing protein.
    
 0.504
U5CWQ3_AMBTC
Uncharacterized protein.
    
 0.496
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.