STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DJ52_AMBTCUncharacterized protein. (619 aa)    
Predicted Functional Partners:
W1NI63_AMBTC
KH_dom_type_1 domain-containing protein.
    
 
 0.821
U5CYC2_AMBTC
Uncharacterized protein.
   
 
 0.721
W1PVE1_AMBTC
Uncharacterized protein.
  
  
 0.612
W1P3Y2_AMBTC
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 
 0.605
W1PCN8_AMBTC
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 
 0.605
W1PGT2_AMBTC
Uroporphyrinogen_deCOase domain-containing protein.
   
 
 0.605
W1PPU0_AMBTC
Uroporphyrinogen_deCOase domain-containing protein.
   
 
 0.605
U5D139_AMBTC
Chorismate synthase.
   
  
 0.572
U5D8N9_AMBTC
Uncharacterized protein.
  
  
 0.572
W1P9X9_AMBTC
Uncharacterized protein.
  
  
 0.566
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.