STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NDW7_AMBTCUncharacterized protein. (344 aa)    
Predicted Functional Partners:
U5D8A3_AMBTC
Uncharacterized protein.
   
 0.959
W1NH59_AMBTC
Uncharacterized protein.
   
 0.946
W1NU15_AMBTC
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.939
W1NW18_AMBTC
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 
 0.924
W1P9D4_AMBTC
Uncharacterized protein.
   
 
 0.923
W1P1C9_AMBTC
Uncharacterized protein.
   
 
 0.921
W1NX41_AMBTC
Uncharacterized protein.
   
 
 0.917
W1NE98_AMBTC
Uncharacterized protein.
   
 
 0.909
W1NEQ9_AMBTC
Peptidylprolyl isomerase.
   
 0.900
W1P8U7_AMBTC
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 
 0.868
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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