STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NDY5_AMBTCUncharacterized protein. (403 aa)    
Predicted Functional Partners:
U5D5F9_AMBTC
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.560
U5CSL4_AMBTC
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.537
W1NIR4_AMBTC
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.537
W1NST6_AMBTC
Cullin domain-containing protein; Belongs to the cullin family.
   
 0.537
W1NT78_AMBTC
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.537
W1PVI7_AMBTC
RING-type domain-containing protein.
    
 0.499
W1PHT9_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
  0.414
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.