STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NGN4_AMBTCAAA domain-containing protein. (1038 aa)    
Predicted Functional Partners:
U5D8X0_AMBTC
MPN domain-containing protein.
    
 0.708
W1P667_AMBTC
TPR_REGION domain-containing protein.
    
 0.701
U5D4B5_AMBTC
UBX domain-containing protein.
    
 0.665
W1PXX3_AMBTC
Uncharacterized protein.
   
 0.643
U5D506_AMBTC
OTU domain-containing protein.
    
 0.640
W1PG66_AMBTC
Pex14_N domain-containing protein.
    
 0.639
U5CMD2_AMBTC
PRKCSH domain-containing protein.
    
 0.621
W1NXX3_AMBTC
Uncharacterized protein.
   
 0.617
U5D9R5_AMBTC
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.612
W1NYJ9_AMBTC
Uncharacterized protein.
    
 0.609
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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