STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NHN9_AMBTCPNPLA domain-containing protein. (434 aa)    
Predicted Functional Partners:
U5CSU3_AMBTC
AB hydrolase-1 domain-containing protein.
    
 
 0.671
U5D7V7_AMBTC
Proline iminopeptidase.
    
 
 0.671
W1P3A6_AMBTC
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.531
W1NWP6_AMBTC
DDHD domain-containing protein.
      
 0.461
W1PK31_AMBTC
BHLH domain-containing protein.
      
 0.450
W1PDK9_AMBTC
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
      
 0.447
W1PYD5_AMBTC
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
      
 0.447
U5CYB0_AMBTC
Uncharacterized protein.
  
 
   0.446
U5CQT7_AMBTC
Uncharacterized protein.
      
 0.439
W1NNH3_AMBTC
AB hydrolase-1 domain-containing protein.
    
 
 0.411
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.