W1NM35_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1NM35_AMBTC

Exonuclease domain-containing protein. (279 aa)

Predicted Functional Partners:

W1NXJ3_AMBTC

0.948

W1PCI0_AMBTC

0.948

W1PRW5_AMBTC

0.619

U5D0L3_AMBTC

0.538

EFTS

0.536

U5DG00_AMBTC

0.536

EFTS-2

0.533

U5DC28_AMBTC

0.526

U5CNM7_AMBTC

0.518

W1NLM1_AMBTC

0.499

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTS	U5D0L3_AMBTC	U5D9A8	U5D0L3	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.949
EFTS	U5DG00_AMBTC	U5D9A8	U5DG00	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.573
EFTS	W1NM35_AMBTC	U5D9A8	W1NM35	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Exonuclease domain-containing protein.	0.536
EFTS-2	U5D0L3_AMBTC	W1NPM5	U5D0L3	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.949
EFTS-2	U5DG00_AMBTC	W1NPM5	U5DG00	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.573
EFTS-2	W1NM35_AMBTC	W1NPM5	W1NM35	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Exonuclease domain-containing protein.	0.533
U5CNM7_AMBTC	W1NM35_AMBTC	U5CNM7	W1NM35	Sulfurtransferase.	Exonuclease domain-containing protein.	0.518
U5D0L3_AMBTC	EFTS	U5D0L3	U5D9A8	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.949
U5D0L3_AMBTC	EFTS-2	U5D0L3	W1NPM5	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.949
U5D0L3_AMBTC	W1NM35_AMBTC	U5D0L3	W1NM35	Uncharacterized protein.	Exonuclease domain-containing protein.	0.538
U5DC28_AMBTC	W1NM35_AMBTC	U5DC28	W1NM35	Uncharacterized protein.	Exonuclease domain-containing protein.	0.526
U5DG00_AMBTC	EFTS	U5DG00	U5D9A8	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.573
U5DG00_AMBTC	EFTS-2	U5DG00	W1NPM5	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.573
U5DG00_AMBTC	W1NM35_AMBTC	U5DG00	W1NM35	Uncharacterized protein.	Exonuclease domain-containing protein.	0.536
W1NLM1_AMBTC	W1NM35_AMBTC	W1NLM1	W1NM35	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Exonuclease domain-containing protein.	0.499
W1NM35_AMBTC	EFTS	W1NM35	U5D9A8	Exonuclease domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.536
W1NM35_AMBTC	EFTS-2	W1NM35	W1NPM5	Exonuclease domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.533
W1NM35_AMBTC	U5CNM7_AMBTC	W1NM35	U5CNM7	Exonuclease domain-containing protein.	Sulfurtransferase.	0.518
W1NM35_AMBTC	U5D0L3_AMBTC	W1NM35	U5D0L3	Exonuclease domain-containing protein.	Uncharacterized protein.	0.538
W1NM35_AMBTC	U5DC28_AMBTC	W1NM35	U5DC28	Exonuclease domain-containing protein.	Uncharacterized protein.	0.526