STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NN98_AMBTCEpimerase domain-containing protein. (335 aa)    
Predicted Functional Partners:
W1PMT2_AMBTC
Uncharacterized protein.
     
 0.943
W1P9Z9_AMBTC
Prenylcys_lyase domain-containing protein.
     
 0.936
W1PTS5_AMBTC
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 0.728
W1P855_AMBTC
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.667
W1P1P4_AMBTC
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.642
W1PR86_AMBTC
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.642
U5CVW0_AMBTC
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.638
U5D192_AMBTC
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.638
U5D6Q0_AMBTC
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.638
W1PFQ2_AMBTC
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.638
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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