STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NP88_AMBTCFYVE-type domain-containing protein. (480 aa)    
Predicted Functional Partners:
W1PIW8_AMBTC
Mevalonate kinase.
    
   0.740
W1PZJ0_AMBTC
Uncharacterized protein.
   
  
 0.554
U5D4V2_AMBTC
Uncharacterized protein.
      
 0.530
U5D9N0_AMBTC
Uncharacterized protein.
      
 0.529
W1NP59_AMBTC
Uncharacterized protein.
   
    0.510
U5D1B0_AMBTC
Uncharacterized protein.
    
 
 0.439
U5D1G7_AMBTC
Uncharacterized protein.
      
 0.431
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.