STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NU77_AMBTCUncharacterized protein. (73 aa)    
Predicted Functional Partners:
W1P200_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
 0.992
W1NSU9_AMBTC
tRNA (adenine(58)-N(1))-methyltransferase.
  
 0.882
U5CM59_AMBTC
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
 
 0.865
W1NJC3_AMBTC
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.705
U5DCV6_AMBTC
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.669
W1PKX8_AMBTC
Brix domain-containing protein.
   
  
 0.654
W1P5K7_AMBTC
Uncharacterized protein.
   
    0.649
W1PEE7_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
    0.647
U5CVJ2_AMBTC
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.641
W1NV91_AMBTC
TRUD domain-containing protein.
  
 
 0.634
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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