STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NVD3_AMBTCUncharacterized protein. (301 aa)    
Predicted Functional Partners:
W1NFX8_AMBTC
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 0.995
U5D1Y8_AMBTC
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.991
W1PET4_AMBTC
Uncharacterized protein.
   
 0.982
W1PX22_AMBTC
Rab-GAP TBC domain-containing protein.
   
 
 0.865
W1PYJ7_AMBTC
PX domain-containing protein.
    
 0.811
W1PQE9_AMBTC
PSII_BNR domain-containing protein.
    
 
 0.783
W1NDL7_AMBTC
GH16 domain-containing protein.
    
 
 0.669
W1NEC4_AMBTC
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.
    
 
 0.669
W1NK39_AMBTC
PX domain-containing protein.
    
 
 0.669
W1PBU6_AMBTC
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.
    
 
 0.669
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (28%) [HD]