STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NW81_AMBTCAAA domain-containing protein; Belongs to the AAA ATPase family. (623 aa)    
Predicted Functional Partners:
U5D8X0_AMBTC
MPN domain-containing protein.
   
 0.919
W1NXX3_AMBTC
Uncharacterized protein.
 
 
 0.916
W1PM67_AMBTC
VWFA domain-containing protein.
   
 0.914
U5D4B5_AMBTC
UBX domain-containing protein.
    
 0.909
U5CMD2_AMBTC
PRKCSH domain-containing protein.
    
 0.906
U5D506_AMBTC
OTU domain-containing protein.
   
 0.901
W1PPE1_AMBTC
Josephin domain-containing protein.
    
 0.877
W1PHT9_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 
0.856
U5CZZ2_AMBTC
PCI domain-containing protein.
   
 0.841
W1PVK8_AMBTC
PCI domain-containing protein.
   
 0.841
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.