W1NWE2_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1NWE2_AMBTC

HTH La-type RNA-binding domain-containing protein. (1032 aa)

Predicted Functional Partners:

W1PHU8_AMBTC

0.571

W1P1X0_AMBTC

0.495

W1NTW2_AMBTC

0.472

W1NZD1_AMBTC

0.472

W1PQD9_AMBTC

0.451

W1PQJ3_AMBTC

0.446

U5DCR1_AMBTC

0.422

W1PIH2_AMBTC

0.422

W1PJ33_AMBTC

0.410

W1NHE8_AMBTC

0.405

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5DCR1_AMBTC	W1NWE2_AMBTC	U5DCR1	W1NWE2	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.422
U5DCR1_AMBTC	W1P1X0_AMBTC	U5DCR1	W1P1X0	Uncharacterized protein.	Uncharacterized protein.	0.998
U5DCR1_AMBTC	W1PHU8_AMBTC	U5DCR1	W1PHU8	Uncharacterized protein.	Uncharacterized protein.	0.819
U5DCR1_AMBTC	W1PIH2_AMBTC	U5DCR1	W1PIH2	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.994
W1NHE8_AMBTC	W1NTW2_AMBTC	W1NHE8	W1NTW2	MI domain-containing protein.	MI domain-containing protein.	0.911
W1NHE8_AMBTC	W1NWE2_AMBTC	W1NHE8	W1NWE2	MI domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.405
W1NHE8_AMBTC	W1NZD1_AMBTC	W1NHE8	W1NZD1	MI domain-containing protein.	MI domain-containing protein.	0.540
W1NHE8_AMBTC	W1PQJ3_AMBTC	W1NHE8	W1PQJ3	MI domain-containing protein.	SUI1 domain-containing protein.	0.409
W1NTW2_AMBTC	W1NHE8_AMBTC	W1NTW2	W1NHE8	MI domain-containing protein.	MI domain-containing protein.	0.911
W1NTW2_AMBTC	W1NWE2_AMBTC	W1NTW2	W1NWE2	MI domain-containing protein.	HTH La-type RNA-binding domain-containing protein.	0.472
W1NTW2_AMBTC	W1NZD1_AMBTC	W1NTW2	W1NZD1	MI domain-containing protein.	MI domain-containing protein.	0.540
W1NTW2_AMBTC	W1PQJ3_AMBTC	W1NTW2	W1PQJ3	MI domain-containing protein.	SUI1 domain-containing protein.	0.409
W1NWE2_AMBTC	U5DCR1_AMBTC	W1NWE2	U5DCR1	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.422
W1NWE2_AMBTC	W1NHE8_AMBTC	W1NWE2	W1NHE8	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.405
W1NWE2_AMBTC	W1NTW2_AMBTC	W1NWE2	W1NTW2	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.472
W1NWE2_AMBTC	W1NZD1_AMBTC	W1NWE2	W1NZD1	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.472
W1NWE2_AMBTC	W1P1X0_AMBTC	W1NWE2	W1P1X0	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.495
W1NWE2_AMBTC	W1PHU8_AMBTC	W1NWE2	W1PHU8	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.571
W1NWE2_AMBTC	W1PIH2_AMBTC	W1NWE2	W1PIH2	HTH La-type RNA-binding domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.422
W1NWE2_AMBTC	W1PJ33_AMBTC	W1NWE2	W1PJ33	HTH La-type RNA-binding domain-containing protein.	Methyltransf_11 domain-containing protein.	0.410