W1NX14_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1NX14_AMBTC

Uncharacterized protein. (1162 aa)

Predicted Functional Partners:

W1NI23_AMBTC

0.750

W1PPJ2_AMBTC

0.750

W1P6U2_AMBTC

0.713

W1PBA6_AMBTC

0.713

W1NVN2_AMBTC

0.685

W1NFX0_AMBTC

0.630

W1P6D1_AMBTC

0.607

W1PK55_AMBTC

0.607

U5DF59_AMBTC

0.589

W1NL97_AMBTC

0.589

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5DF59_AMBTC	W1NL97_AMBTC	U5DF59	W1NL97	Uncharacterized protein.	Uncharacterized protein.	0.806
U5DF59_AMBTC	W1NVN2_AMBTC	U5DF59	W1NVN2	Uncharacterized protein.	Uncharacterized protein.	0.909
U5DF59_AMBTC	W1NX14_AMBTC	U5DF59	W1NX14	Uncharacterized protein.	Uncharacterized protein.	0.589
W1NFX0_AMBTC	W1NX14_AMBTC	W1NFX0	W1NX14	SANT domain-containing protein.	Uncharacterized protein.	0.630
W1NI23_AMBTC	W1NX14_AMBTC	W1NI23	W1NX14	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.750
W1NI23_AMBTC	W1P6D1_AMBTC	W1NI23	W1P6D1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	RPA_C domain-containing protein.	0.859
W1NI23_AMBTC	W1P6U2_AMBTC	W1NI23	W1P6U2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	3'-5' exonuclease domain-containing protein.	0.958
W1NI23_AMBTC	W1PBA6_AMBTC	W1NI23	W1PBA6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.958
W1NI23_AMBTC	W1PK55_AMBTC	W1NI23	W1PK55	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	RPA_C domain-containing protein.	0.859
W1NI23_AMBTC	W1PPJ2_AMBTC	W1NI23	W1PPJ2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900
W1NL97_AMBTC	U5DF59_AMBTC	W1NL97	U5DF59	Uncharacterized protein.	Uncharacterized protein.	0.806
W1NL97_AMBTC	W1NVN2_AMBTC	W1NL97	W1NVN2	Uncharacterized protein.	Uncharacterized protein.	0.909
W1NL97_AMBTC	W1NX14_AMBTC	W1NL97	W1NX14	Uncharacterized protein.	Uncharacterized protein.	0.589
W1NVN2_AMBTC	U5DF59_AMBTC	W1NVN2	U5DF59	Uncharacterized protein.	Uncharacterized protein.	0.909
W1NVN2_AMBTC	W1NL97_AMBTC	W1NVN2	W1NL97	Uncharacterized protein.	Uncharacterized protein.	0.909
W1NVN2_AMBTC	W1NX14_AMBTC	W1NVN2	W1NX14	Uncharacterized protein.	Uncharacterized protein.	0.685
W1NX14_AMBTC	U5DF59_AMBTC	W1NX14	U5DF59	Uncharacterized protein.	Uncharacterized protein.	0.589
W1NX14_AMBTC	W1NFX0_AMBTC	W1NX14	W1NFX0	Uncharacterized protein.	SANT domain-containing protein.	0.630
W1NX14_AMBTC	W1NI23_AMBTC	W1NX14	W1NI23	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.750
W1NX14_AMBTC	W1NL97_AMBTC	W1NX14	W1NL97	Uncharacterized protein.	Uncharacterized protein.	0.589