STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NYE1_AMBTCUncharacterized protein. (760 aa)    
Predicted Functional Partners:
W1PEI1_AMBTC
Nudix hydrolase domain-containing protein.
     
 0.492
W1PR78_AMBTC
Uncharacterized protein.
   
 
  0.479
U5D122_AMBTC
RNase_PH domain-containing protein.
     
 0.478
W1PCR8_AMBTC
Uncharacterized protein.
   
  
 0.465
W1PWB2_AMBTC
S1 domain-containing protein.
   
  0.465
U5D1Q4_AMBTC
Uncharacterized protein.
      
 0.463
W1NPH5_AMBTC
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
      
 0.463
U5D261_AMBTC
AAA domain-containing protein.
      
 0.461
W1NKM9_AMBTC
AAA domain-containing protein.
      
 0.444
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.