STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NZ59_AMBTCJ domain-containing protein. (628 aa)    
Predicted Functional Partners:
U5DHC1_AMBTC
U1-type domain-containing protein.
   
 
 0.743
W1PNA5_AMBTC
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
    
 
 0.608
W1PI69_AMBTC
C2H2-type domain-containing protein.
   
 
 0.527
W1PC97_AMBTC
Peptidase_M24 domain-containing protein.
   
 
 0.506
W1PCG8_AMBTC
Uncharacterized protein.
   
 
 0.506
W1PKT0_AMBTC
Uncharacterized protein.
   
 
 0.472
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
 
 0.461
W1P4T3_AMBTC
Uncharacterized protein.
  
  
 0.451
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (24%) [HD]