STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NZQ1_AMBTCChloride channel protein. (789 aa)    
Predicted Functional Partners:
W1PTT6_AMBTC
Chloride channel protein.
  
   
 0.686
W1PV12_AMBTC
Chloride channel protein.
  
   
0.608
ndhF
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).
      
 0.553
W1PG04_AMBTC
Aminopeptidase.
      
 0.534
W1NZT1_AMBTC
Uncharacterized protein.
      
 0.525
atpI
ATP synthase subunit a, chloroplastic; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
     
 0.463
W1NHB2_AMBTC
Uncharacterized protein; Belongs to the protein kinase superfamily.
      
 0.461
W1PB44_AMBTC
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
    
 
 0.457
W1PBP0_AMBTC
FAD-binding PCMH-type domain-containing protein.
      
 0.412
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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