STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P1S1_AMBTCUncharacterized protein. (350 aa)    
Predicted Functional Partners:
W1PCW5_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.773
W1PGH0_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.773
U5CWP9_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.771
U5DFR7_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.771
U5D406_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.764
W1NEW4_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.697
W1PP96_AMBTC
CBFD_NFYB_HMF domain-containing protein.
   
 0.697
W1NEF6_AMBTC
CBFD_NFYB_HMF domain-containing protein.
  
 
 0.639
W1PPV8_AMBTC
CBFD_NFYB_HMF domain-containing protein.
    
 0.593
U5D2T5_AMBTC
CBFD_NFYB_HMF domain-containing protein.
    
 0.565
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.