STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P408_AMBTCComplex1_49kDa domain-containing protein. (156 aa)    
Predicted Functional Partners:
U5D8H9_AMBTC
Uncharacterized protein.
   
 0.977
W1NTZ4_AMBTC
Uncharacterized protein.
   
 0.977
W1PT74_AMBTC
CHCH domain-containing protein.
   
 0.976
W1PFD0_AMBTC
L51_S25_CI-B8 domain-containing protein.
   
 0.973
U5CQW5_AMBTC
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
 0.972
U5D020_AMBTC
zf-CHCC domain-containing protein.
   
 0.969
U5CVW8_AMBTC
Uncharacterized protein.
  
 0.965
U5D262_AMBTC
Uncharacterized protein; Belongs to the complex I LYR family.
   
 0.962
U5D8U4_AMBTC
Uncharacterized protein.
   
 0.962
ndhC
NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
  
 0.960
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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