STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P5B9_AMBTCPhytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1124 aa)    
Predicted Functional Partners:
W1P3A7_AMBTC
BHLH domain-containing protein.
    
 0.965
U5D1T9_AMBTC
Uncharacterized protein.
    
 0.946
U5D5U5_AMBTC
BHLH domain-containing protein.
    
 
 0.537
W1NRT4_AMBTC
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 
 0.528
W1NDV3_AMBTC
Uncharacterized protein.
     
 0.521
W1P6A4_AMBTC
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
     
 0.511
W1P7K7_AMBTC
Photolyase/cryptochrome alpha/beta domain-containing protein.
   
 
 0.480
W1NMV8_AMBTC
Uncharacterized protein.
    
 
 0.468
W1NYW6_AMBTC
BHLH domain-containing protein.
    
 
 0.461
W1P879_AMBTC
Uncharacterized protein.
      
 0.461
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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