STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P6F6_AMBTCReticulon-like protein. (558 aa)    
Predicted Functional Partners:
W1PDK9_AMBTC
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.977
W1PYD5_AMBTC
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.977
U5D3X9_AMBTC
Reticulon-like protein.
  
  
 
0.905
U5D8H5_AMBTC
SE domain-containing protein.
   
 
 0.863
W1PYH9_AMBTC
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 
 0.841
W1PAJ0_AMBTC
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.838
U5D2Y2_AMBTC
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
   
 0.687
W1P238_AMBTC
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
   
 0.687
W1PYW3_AMBTC
Uncharacterized protein.
   
 
 0.647
W1PGA0_AMBTC
Uncharacterized protein; Belongs to the cytochrome P450 family.
 
 
 0.638
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.