STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P723_AMBTCUncharacterized protein. (218 aa)    
Predicted Functional Partners:
U5CVS5_AMBTC
RT_RNaseH_2 domain-containing protein.
 
     0.636
W1NLW3_AMBTC
Reverse transcriptase domain-containing protein.
  
     0.533
W1NHT8_AMBTC
Uncharacterized protein.
  
     0.526
W1PHW8_AMBTC
Reverse transcriptase domain-containing protein.
  
     0.522
W1PLW6_AMBTC
Integrase_H2C2 domain-containing protein.
  
     0.521
U5CUZ6_AMBTC
RT_RNaseH_2 domain-containing protein.
  
     0.519
U5CLT2_AMBTC
Integrase catalytic domain-containing protein.
  
     0.515
U5CXV9_AMBTC
RT_RNaseH domain-containing protein.
  
     0.508
U5D8I9_AMBTC
Integrase_H2C2 domain-containing protein.
  
     0.484
U5CLY2_AMBTC
Uncharacterized protein.
  
     0.407
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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