STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P863_AMBTCSPOC domain-containing protein. (470 aa)    
Predicted Functional Partners:
W1PDP2_AMBTC
TFIIS central domain-containing protein.
 
      0.851
U5CZT5_AMBTC
RPOLD domain-containing protein.
    
  0.577
W1NUM1_AMBTC
RPOL9 domain-containing protein.
    
 0.568
W1NXR4_AMBTC
HECT domain-containing protein.
   
    0.562
W1P4U6_AMBTC
HECT domain-containing protein.
   
    0.562
U5CY16_AMBTC
Uncharacterized protein.
    
  0.531
U5D4P8_AMBTC
Uncharacterized protein.
    
  0.531
U5D9C3_AMBTC
RNA_pol_L_2 domain-containing protein.
    
  0.531
U5DG00_AMBTC
Uncharacterized protein.
    
  0.531
W1PQR2_AMBTC
RPOL4c domain-containing protein.
    
  0.531
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.