STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P880_AMBTCPectate lyase. (438 aa)    
Predicted Functional Partners:
W1NTK6_AMBTC
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.745
W1NT09_AMBTC
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.717
W1NJ36_AMBTC
Uncharacterized protein.
     
 0.714
U5D1Z1_AMBTC
PMEI domain-containing protein.
   
 
 0.672
W1P6V9_AMBTC
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.
   
 
 0.672
W1P6M7_AMBTC
Pectinesterase.
   
 
 0.662
W1PC58_AMBTC
Pectinesterase.
   
 
 0.662
W1NH90_AMBTC
Pectinesterase.
   
 
 0.659
W1P6V5_AMBTC
Pectinesterase.
    
  0.654
U5CPU8_AMBTC
Pectinesterase.
   
 
 0.653
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.