STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P8B2_AMBTCUncharacterized protein. (368 aa)    
Predicted Functional Partners:
W1PY31_AMBTC
Aminotran_1_2 domain-containing protein.
  
 
 0.974
U5D896_AMBTC
Chorismate mutase.
  
 
 0.965
W1PFX5_AMBTC
Chorismate mutase.
  
 
 0.965
U5DAW0_AMBTC
Prephenate/arogenate dehydrogenase domain-containing protein.
 
 
 0.961
W1PZP8_AMBTC
Prephenate/arogenate dehydrogenase domain-containing protein.
 
 
 0.959
W1NRX6_AMBTC
Aspartate aminotransferase.
    
 0.957
W1NVA1_AMBTC
Aspartate aminotransferase.
    
 0.957
W1PRK6_AMBTC
Aspartate aminotransferase.
    
 0.957
W1NGB5_AMBTC
Aminotran_1_2 domain-containing protein.
 
 
 0.936
W1NNQ9_AMBTC
Aminotran_1_2 domain-containing protein.
  
 
 0.935
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.