W1P8G9_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1P8G9_AMBTC

Uncharacterized protein. (119 aa)

Predicted Functional Partners:

W1PD64_AMBTC

0.815

W1NTI9_AMBTC

0.717

U5DHY1_AMBTC

0.713

W1NWT5_AMBTC

0.654

W1NYY6_AMBTC

0.611

W1PJF0_AMBTC

0.510

W1PTS5_AMBTC

0.502

U5D389_AMBTC

0.491

W1P855_AMBTC

0.491

W1PJ33_AMBTC

0.475

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5D389_AMBTC	U5DHY1_AMBTC	U5D389	U5DHY1	Uncharacterized protein.	RIO domain-containing protein.	0.740
U5D389_AMBTC	W1NTI9_AMBTC	U5D389	W1NTI9	Uncharacterized protein.	Uncharacterized protein.	0.754
U5D389_AMBTC	W1NWT5_AMBTC	U5D389	W1NWT5	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.687
U5D389_AMBTC	W1NYY6_AMBTC	U5D389	W1NYY6	Uncharacterized protein.	Uncharacterized protein.	0.763
U5D389_AMBTC	W1P8G9_AMBTC	U5D389	W1P8G9	Uncharacterized protein.	Uncharacterized protein.	0.491
U5D389_AMBTC	W1PD64_AMBTC	U5D389	W1PD64	Uncharacterized protein.	Uncharacterized protein.	0.739
U5D389_AMBTC	W1PJ33_AMBTC	U5D389	W1PJ33	Uncharacterized protein.	Methyltransf_11 domain-containing protein.	0.703
U5D389_AMBTC	W1PJF0_AMBTC	U5D389	W1PJF0	Uncharacterized protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.694
U5D389_AMBTC	W1PTS5_AMBTC	U5D389	W1PTS5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.507
U5DHY1_AMBTC	U5D389_AMBTC	U5DHY1	U5D389	RIO domain-containing protein.	Uncharacterized protein.	0.740
U5DHY1_AMBTC	W1NTI9_AMBTC	U5DHY1	W1NTI9	RIO domain-containing protein.	Uncharacterized protein.	0.995
U5DHY1_AMBTC	W1NWT5_AMBTC	U5DHY1	W1NWT5	RIO domain-containing protein.	Bms1-type G domain-containing protein.	0.996
U5DHY1_AMBTC	W1NYY6_AMBTC	U5DHY1	W1NYY6	RIO domain-containing protein.	Uncharacterized protein.	0.998
U5DHY1_AMBTC	W1P855_AMBTC	U5DHY1	W1P855	RIO domain-containing protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.962
U5DHY1_AMBTC	W1P8G9_AMBTC	U5DHY1	W1P8G9	RIO domain-containing protein.	Uncharacterized protein.	0.713
U5DHY1_AMBTC	W1PD64_AMBTC	U5DHY1	W1PD64	RIO domain-containing protein.	Uncharacterized protein.	0.999
U5DHY1_AMBTC	W1PJ33_AMBTC	U5DHY1	W1PJ33	RIO domain-containing protein.	Methyltransf_11 domain-containing protein.	0.902
U5DHY1_AMBTC	W1PJF0_AMBTC	U5DHY1	W1PJF0	RIO domain-containing protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.929
U5DHY1_AMBTC	W1PTS5_AMBTC	U5DHY1	W1PTS5	RIO domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.978
W1NTI9_AMBTC	U5D389_AMBTC	W1NTI9	U5D389	Uncharacterized protein.	Uncharacterized protein.	0.754