STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P8P9_AMBTC3-ketoacyl-CoA synthase. (462 aa)    
Predicted Functional Partners:
W1PUP8_AMBTC
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.711
W1Q054_AMBTC
Uncharacterized protein.
    
 0.711
W1P7X1_AMBTC
Uncharacterized protein.
   
 0.571
W1PG06_AMBTC
Uncharacterized protein.
   
 0.536
W1NK91_AMBTC
Uncharacterized protein.
    
 0.500
W1P3L5_AMBTC
TPR_REGION domain-containing protein.
   
 0.484
W1P2E3_AMBTC
Beta-Casp domain-containing protein.
    
 0.481
U5CW35_AMBTC
Aldedh domain-containing protein.
   
 0.428
W1PUM7_AMBTC
Uncharacterized protein.
    
 0.405
W1PVT9_AMBTC
Uncharacterized protein.
    
 0.405
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (30%) [HD]