STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P9R7_AMBTCUncharacterized protein. (1345 aa)    
Predicted Functional Partners:
W1NJD1_AMBTC
Uncharacterized protein.
     
 0.795
W1PLX3_AMBTC
N-acetyltransferase domain-containing protein.
    
   0.712
W1PU04_AMBTC
Foie-gras_1 domain-containing protein.
   
    0.679
U5D3Z5_AMBTC
Uncharacterized protein.
    
 
 0.653
W1NW65_AMBTC
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
      
 0.480
W1PA90_AMBTC
Uncharacterized protein.
  
    0.478
W1P9V2_AMBTC
Uncharacterized protein.
     
 0.472
W1PWX8_AMBTC
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
  
     0.466
U5CR37_AMBTC
TFCD_C domain-containing protein.
      
 0.461
W1P5B5_AMBTC
F-box domain-containing protein.
      
 0.451
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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