STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PAS9_AMBTCUncharacterized protein. (238 aa)    
Predicted Functional Partners:
U5DFE2_AMBTC
Uncharacterized protein.
    
 0.511
U5DG81_AMBTC
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
  
  
 0.501
W1NZ84_AMBTC
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.
    
 0.486
W1PYY0_AMBTC
IMPDH domain-containing protein.
    
 0.486
U5D9R5_AMBTC
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 
  0.479
U5D099_AMBTC
Uncharacterized protein.
   
 
 0.455
W1PG66_AMBTC
Pex14_N domain-containing protein.
   
 
  0.452
U5D0N7_AMBTC
Uncharacterized protein.
     
 0.444
W1NWJ2_AMBTC
NTF2 domain-containing protein.
     
 0.444
U5DGJ5_AMBTC
Uncharacterized protein.
    
 0.428
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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