STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PF87_AMBTCUncharacterized protein. (1927 aa)    
Predicted Functional Partners:
U5D0E0_AMBTC
Uncharacterized protein.
   
 0.938
U5D572_AMBTC
Uncharacterized protein.
   
 0.874
U5DEL0_AMBTC
Uncharacterized protein.
   
 0.874
U5D1C4_AMBTC
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.836
W1NWK9_AMBTC
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.836
W1NSY6_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
 0.832
W1NX84_AMBTC
Sec16_C domain-containing protein.
   
 0.832
W1NY30_AMBTC
Uncharacterized protein.
   
 0.832
W1NHQ1_AMBTC
BHLH domain-containing protein.
    
 0.802
W1NZQ9_AMBTC
Uncharacterized protein.
    
 0.802
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.