STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PFT7_AMBTCRECA_2 domain-containing protein. (324 aa)    
Predicted Functional Partners:
U5D0X8_AMBTC
RECA_2 domain-containing protein.
  
 0.915
W1PBM2_AMBTC
RECA_2 domain-containing protein.
  
 
0.908
W1PLM3_AMBTC
Uncharacterized protein.
   
 0.899
W1P6U2_AMBTC
3'-5' exonuclease domain-containing protein.
  
 0.893
W1PBA6_AMBTC
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.893
W1NJ92_AMBTC
Uncharacterized protein.
   
 0.864
W1NJ03_AMBTC
RECA_2 domain-containing protein.
  
  
0.753
W1NV31_AMBTC
Uncharacterized protein; Belongs to the RecA family.
   
0.738
W1PPK0_AMBTC
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
  
 0.677
W1PQK0_AMBTC
Zinc-hook domain-containing protein.
   
 0.668
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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