STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PFV8_AMBTCSWIRM domain-containing protein. (831 aa)    
Predicted Functional Partners:
W1NPD1_AMBTC
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.710
U5DF59_AMBTC
Uncharacterized protein.
    
  0.649
W1NL97_AMBTC
Uncharacterized protein.
    
  0.649
W1P2N5_AMBTC
Uncharacterized protein.
    
  0.649
W1P695_AMBTC
Uncharacterized protein.
    
  0.649
U5D084_AMBTC
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.564
W1NXH7_AMBTC
Hist_deacetyl domain-containing protein.
    
 0.492
W1P6A4_AMBTC
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.435
U5DE08_AMBTC
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.419
W1NGP3_AMBTC
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.419
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.