STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PG68_AMBTCWD_REPEATS_REGION domain-containing protein. (611 aa)    
Predicted Functional Partners:
W1NFV9_AMBTC
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 
 0.931
U5D7U3_AMBTC
Adenylyl cyclase-associated protein; Belongs to the CAP family.
   
 
 0.832
W1NJ86_AMBTC
Uncharacterized protein.
   
 0.827
W1NL08_AMBTC
Uncharacterized protein.
   
 0.827
W1Q0U6_AMBTC
Uncharacterized protein; Belongs to the actin family.
   
 0.827
W1PF76_AMBTC
Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.
   
 0.780
W1PHP0_AMBTC
Uncharacterized protein.
   
 0.773
U5D1X1_AMBTC
Uncharacterized protein; Belongs to the actin family.
   
 0.751
U5D6L2_AMBTC
Uncharacterized protein.
   
 0.751
U5D6Q9_AMBTC
Uncharacterized protein.
   
 0.751
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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