W1PKV8_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1PKV8_AMBTC

ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family. (139 aa)

Predicted Functional Partners:

U5D7U3_AMBTC

0.800

W1PG68_AMBTC

0.697

U5D1B6_AMBTC

0.670

U5CPU0_AMBTC

0.607

W1NFV9_AMBTC

0.606

U5D1X1_AMBTC

0.598

U5D6L2_AMBTC

0.579

U5D6Q9_AMBTC

0.579

U5DGX5_AMBTC

0.579

W1NVU4_AMBTC

0.579

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5CPU0_AMBTC	U5D1X1_AMBTC	U5CPU0	U5D1X1	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein; Belongs to the actin family.	0.539
U5CPU0_AMBTC	U5D6L2_AMBTC	U5CPU0	U5D6L2	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5CPU0_AMBTC	U5D6Q9_AMBTC	U5CPU0	U5D6Q9	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5CPU0_AMBTC	U5D7U3_AMBTC	U5CPU0	U5D7U3	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.803
U5CPU0_AMBTC	U5DGX5_AMBTC	U5CPU0	U5DGX5	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5CPU0_AMBTC	W1NFV9_AMBTC	U5CPU0	W1NFV9	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.538
U5CPU0_AMBTC	W1NVU4_AMBTC	U5CPU0	W1NVU4	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5CPU0_AMBTC	W1PG68_AMBTC	U5CPU0	W1PG68	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	WD_REPEATS_REGION domain-containing protein.	0.468
U5CPU0_AMBTC	W1PKV8_AMBTC	U5CPU0	W1PKV8	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.607
U5D1B6_AMBTC	U5D1X1_AMBTC	U5D1B6	U5D1X1	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein; Belongs to the actin family.	0.539
U5D1B6_AMBTC	U5D6L2_AMBTC	U5D1B6	U5D6L2	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5D1B6_AMBTC	U5D6Q9_AMBTC	U5D1B6	U5D6Q9	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5D1B6_AMBTC	U5D7U3_AMBTC	U5D1B6	U5D7U3	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.803
U5D1B6_AMBTC	U5DGX5_AMBTC	U5D1B6	U5DGX5	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5D1B6_AMBTC	W1NFV9_AMBTC	U5D1B6	W1NFV9	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.538
U5D1B6_AMBTC	W1NVU4_AMBTC	U5D1B6	W1NVU4	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.824
U5D1B6_AMBTC	W1PG68_AMBTC	U5D1B6	W1PG68	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	WD_REPEATS_REGION domain-containing protein.	0.468
U5D1B6_AMBTC	W1PKV8_AMBTC	U5D1B6	W1PKV8	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.670
U5D1X1_AMBTC	U5CPU0_AMBTC	U5D1X1	U5CPU0	Uncharacterized protein; Belongs to the actin family.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.539
U5D1X1_AMBTC	U5D1B6_AMBTC	U5D1X1	U5D1B6	Uncharacterized protein; Belongs to the actin family.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.539