W1PL52_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1PL52_AMBTC

Uncharacterized protein. (828 aa)

Predicted Functional Partners:

W1PVI7_AMBTC

0.887

W1NGR4_AMBTC

0.818

W1PQQ3_AMBTC

0.818

U5CSL4_AMBTC

0.667

W1NIR4_AMBTC

0.667

W1NST6_AMBTC

0.667

W1NT78_AMBTC

0.667

W1P4U6_AMBTC

0.599

W1PPV7_AMBTC

0.569

W1NXR4_AMBTC

0.558

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5CSL4_AMBTC	W1NGR4_AMBTC	U5CSL4	W1NGR4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.879
U5CSL4_AMBTC	W1NXR4_AMBTC	U5CSL4	W1NXR4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	HECT domain-containing protein.	0.632
U5CSL4_AMBTC	W1P4U6_AMBTC	U5CSL4	W1P4U6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	HECT domain-containing protein.	0.677
U5CSL4_AMBTC	W1PL52_AMBTC	U5CSL4	W1PL52	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.667
U5CSL4_AMBTC	W1PQQ3_AMBTC	U5CSL4	W1PQQ3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.879
U5CSL4_AMBTC	W1PVI7_AMBTC	U5CSL4	W1PVI7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.950
W1NGR4_AMBTC	U5CSL4_AMBTC	W1NGR4	U5CSL4	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.879
W1NGR4_AMBTC	W1NIR4_AMBTC	W1NGR4	W1NIR4	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.879
W1NGR4_AMBTC	W1NST6_AMBTC	W1NGR4	W1NST6	Uncharacterized protein; Belongs to the SKP1 family.	Cullin domain-containing protein; Belongs to the cullin family.	0.879
W1NGR4_AMBTC	W1NT78_AMBTC	W1NGR4	W1NT78	Uncharacterized protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.879
W1NGR4_AMBTC	W1NXR4_AMBTC	W1NGR4	W1NXR4	Uncharacterized protein; Belongs to the SKP1 family.	HECT domain-containing protein.	0.442
W1NGR4_AMBTC	W1P4U6_AMBTC	W1NGR4	W1P4U6	Uncharacterized protein; Belongs to the SKP1 family.	HECT domain-containing protein.	0.634
W1NGR4_AMBTC	W1PL52_AMBTC	W1NGR4	W1PL52	Uncharacterized protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.818
W1NGR4_AMBTC	W1PVI7_AMBTC	W1NGR4	W1PVI7	Uncharacterized protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.967
W1NIR4_AMBTC	W1NGR4_AMBTC	W1NIR4	W1NGR4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.879
W1NIR4_AMBTC	W1NXR4_AMBTC	W1NIR4	W1NXR4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	HECT domain-containing protein.	0.632
W1NIR4_AMBTC	W1P4U6_AMBTC	W1NIR4	W1P4U6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	HECT domain-containing protein.	0.677
W1NIR4_AMBTC	W1PL52_AMBTC	W1NIR4	W1PL52	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.667
W1NIR4_AMBTC	W1PQQ3_AMBTC	W1NIR4	W1PQQ3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.916
W1NIR4_AMBTC	W1PVI7_AMBTC	W1NIR4	W1PVI7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.960