STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PMF9_AMBTCUbiquitin-like domain-containing protein. (267 aa)    
Predicted Functional Partners:
U5D5V6_AMBTC
Uncharacterized protein.
  
 
  0.531
U5D4H8_AMBTC
Uncharacterized protein.
  
     0.519
W1PPX9_AMBTC
LRRNT_2 domain-containing protein.
  
     0.515
W1P223_AMBTC
Uncharacterized protein.
  
     0.509
U5CY83_AMBTC
Uncharacterized protein.
  
     0.508
W1PKG9_AMBTC
Uncharacterized protein.
  
     0.505
U5D8S8_AMBTC
Uncharacterized protein.
  
     0.503
U5D1B3_AMBTC
Uncharacterized protein.
  
     0.501
U5CQG3_AMBTC
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
  
     0.500
W1P3G1_AMBTC
Uncharacterized protein.
  
     0.499
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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