STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PN04_AMBTCUncharacterized protein. (1450 aa)    
Predicted Functional Partners:
U5D644_AMBTC
Uncharacterized protein; Belongs to the cyclin family.
   
 
 0.704
W1PJS0_AMBTC
Cyclin N-terminal domain-containing protein.
   
 
 0.704
W1PYT2_AMBTC
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 
 0.704
W1NSN3_AMBTC
Uncharacterized protein.
  
 
 
 0.608
U5CL99_AMBTC
Lectin_legB domain-containing protein.
    
 
 0.482
U5CUE2_AMBTC
Protein kinase domain-containing protein.
    
 
 0.482
U5CZC0_AMBTC
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.482
U5D076_AMBTC
Protein kinase domain-containing protein.
    
 
 0.482
U5D925_AMBTC
Protein kinase domain-containing protein.
    
 
 0.482
U5DD83_AMBTC
Protein kinase domain-containing protein.
    
 
 0.482
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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