STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PNK0_AMBTCSMC_N domain-containing protein. (516 aa)    
Predicted Functional Partners:
W1PPC1_AMBTC
SMC hinge domain-containing protein.
 
     0.948
U5D6I6_AMBTC
Uncharacterized protein.
  
 0.932
U5CZ75_AMBTC
Uncharacterized protein.
   
 0.930
U5D0V9_AMBTC
Uncharacterized protein.
   
 0.930
W1PLJ6_AMBTC
Uncharacterized protein.
   
 0.930
U5CX04_AMBTC
SMC_N domain-containing protein.
  
0.927
U5CSJ8_AMBTC
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 0.918
W1PNP0_AMBTC
Uncharacterized protein.
   
 0.916
W1PPF8_AMBTC
DUF641 domain-containing protein.
   
 0.916
W1NKW2_AMBTC
Cnd3 domain-containing protein.
   
 0.910
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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