STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PNV1_AMBTCUncharacterized protein. (590 aa)    
Predicted Functional Partners:
U5CMD2_AMBTC
PRKCSH domain-containing protein.
   
 0.956
U5CYZ1_AMBTC
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.876
U5DDV4_AMBTC
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.876
W1NJ83_AMBTC
Uncharacterized protein.
    
 0.820
W1NYD4_AMBTC
Uncharacterized protein.
    
 0.820
W1PH03_AMBTC
F-box domain-containing protein.
    
 0.820
W1NRE0_AMBTC
Uncharacterized protein.
    
 0.772
W1NTP6_AMBTC
ANK_REP_REGION domain-containing protein.
    
 0.772
W1NW81_AMBTC
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 0.772
W1P6P0_AMBTC
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.772
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.