W1PPH5_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1PPH5_AMBTC

NAD(P)-bd_dom domain-containing protein. (280 aa)

Predicted Functional Partners:

ndhJ

0.906

W1PT74_AMBTC

0.894

W1PU58_AMBTC

0.867

W1NTZ4_AMBTC

0.864

U5D8U4_AMBTC

0.860

U5D262_AMBTC

0.859

U5CQW5_AMBTC

0.857

W1PFD0_AMBTC

0.856

W1PAD0_AMBTC

0.843

U5D8H9_AMBTC

0.842

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5CQW5_AMBTC	U5D262_AMBTC	U5CQW5	U5D262	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
U5CQW5_AMBTC	U5D8H9_AMBTC	U5CQW5	U5D8H9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.999
U5CQW5_AMBTC	U5D8U4_AMBTC	U5CQW5	U5D8U4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.999
U5CQW5_AMBTC	W1NTZ4_AMBTC	U5CQW5	W1NTZ4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.999
U5CQW5_AMBTC	W1PAD0_AMBTC	U5CQW5	W1PAD0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein.	0.999
U5CQW5_AMBTC	W1PFD0_AMBTC	U5CQW5	W1PFD0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	L51_S25_CI-B8 domain-containing protein.	0.999
U5CQW5_AMBTC	W1PPH5_AMBTC	U5CQW5	W1PPH5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NAD(P)-bd_dom domain-containing protein.	0.857
U5CQW5_AMBTC	W1PT74_AMBTC	U5CQW5	W1PT74	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	CHCH domain-containing protein.	0.999
U5CQW5_AMBTC	W1PU58_AMBTC	U5CQW5	W1PU58	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.996
U5CQW5_AMBTC	ndhJ	U5CQW5	Q70Y00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	0.999
U5D262_AMBTC	U5CQW5_AMBTC	U5D262	U5CQW5	Uncharacterized protein; Belongs to the complex I LYR family.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
U5D262_AMBTC	U5D8H9_AMBTC	U5D262	U5D8H9	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.999
U5D262_AMBTC	U5D8U4_AMBTC	U5D262	U5D8U4	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.999
U5D262_AMBTC	W1NTZ4_AMBTC	U5D262	W1NTZ4	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.999
U5D262_AMBTC	W1PAD0_AMBTC	U5D262	W1PAD0	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.999
U5D262_AMBTC	W1PFD0_AMBTC	U5D262	W1PFD0	Uncharacterized protein; Belongs to the complex I LYR family.	L51_S25_CI-B8 domain-containing protein.	0.999
U5D262_AMBTC	W1PPH5_AMBTC	U5D262	W1PPH5	Uncharacterized protein; Belongs to the complex I LYR family.	NAD(P)-bd_dom domain-containing protein.	0.859
U5D262_AMBTC	W1PT74_AMBTC	U5D262	W1PT74	Uncharacterized protein; Belongs to the complex I LYR family.	CHCH domain-containing protein.	0.999
U5D262_AMBTC	W1PU58_AMBTC	U5D262	W1PU58	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.993
U5D262_AMBTC	ndhJ	U5D262	Q70Y00	Uncharacterized protein; Belongs to the complex I LYR family.	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.	0.999